Clove Constituents as new leads for the Design and development of Multi-targeted Anti-Alzheimer activity

 

Safiya Sultana T*, Sivakumar M

Department of Pharmacology, Sri Ramachandra Institute of Higher Education and Research,

Porur, Chennai – 600116.

*Corresponding Author E-mail: sashatasneem98@gmail.com

 

ABSTRACT:

Objective: To use virtual screening analysis to screen out the phytoconstituents of Syzygium aromaticum against multiple targets of AD and determine its anti-oxidant and inflammatory inhibitory property. Methods: The compounds listed out from Syzygium aromaticum were subjected to virtual screening based on their drug likeness property and bioactivity scores. The molecular docking simulation such as HEX 8.0, PyRx, MVD along with Auto Dock 4.2 were employed to determine the potential candidate for providing activity against multiple targets of AD. The toxicity estimation was also carried out using TEST software. The potential candidate was further evaluated using DPPH, FRAT, Albumin denaturation and Proteinase inhibition method. Results: Only eight phytoconstituents were selected for virtual screening as they possessed drug likeness property and better bioactivity score for inhibition of kinases, proteases and enzymes. The docking results from various tools predicted that Oleanolic acid can be considered as potential constituents for multi-target action against AD. Toxicity estimation was in range. It also exhibited anti-oxidant and inflammatory inhibition providing its evidence for anti-AD activity. Conclusion: Taken together, these virtual screening results and in-vitro assays suggest that Oleanolic acid has multi target action against AD, which can be proved further with in-vivo studies.

 

KEYWORDS: Syzygium aromaticum, Docking, Multi-target action, DPPH, Albumin denaturation.

 

 


1.0   INTRODUCTION:

Dementia being the most perceived kind of Alzheimer's disease is now a powerful neurodegenerative issue which is regularly seen in older people.1 One of the basic highlights of Alzheimer's illness is degeneration of cholinergic neurons, situated in the basal forebrain cores, dynamically denying the cerebrum of its cholinergic information.2 The etiology of Alzheimer's ailment being unknown, yet the impact of the illness procedure prompts neuronal injury.3 The major biochemical variation from the norm of AD happens in the medial lobe (hippocampus) and cerebral cortex as a decrease of protein enzyme cholineacetyl transferase. The lack of this protein causes decline in Ach in the cerebrum.4 Two trademark histopathology highlights connected to AD are an expansion in amyloid plaques and high thickness of neurofibrillary tangles.5

 

 

Aß is the centre of neuritic plaques and is a section from APP which may cause inflammation followed by cell death. Inflammation and free radicals in later AD ends up in degeneration of neurons resulting in AD.6 In late days, AchE inhibitors7 and NMDA partial agonist are considered for the treatment. A more secure way to handle such conditions would be utilization of natural anti-cholinesterase.8

 

Syzygium aromaticum (Myrtaceae), a tropical evergreen plant, broadly utilized as spice, seasoning agent and in human nutrition.9 Studies had described the remedial properties of clove, for example, sexual enhancer, stomachic, carminative, antispasmodic, mitigating, cancer prevention agent, anti-hyperglycemic, against stress, antimutagenic, and allelopathic, anti-coagulant10 antiseptic and anesthetic to toothache among different pain.11 In any case, there are studies suggesting the impact of clove on the neuronal activities. By this manner, the primary point of this work is to predict the potential constituent of clove that produces multi target action in Alzheimer's disease.12

 

2.0 MATERIALS AND METHODS:

2.1 Virtual screening analysis:

2.1.1 Preparation of Target Protein:

The focus was on target proteins of AD such as Alzheimer's disease amyloid β-peptide (PDB ID: 1IYT), Binary complex structure of human tau protein kinase I(PDB ID: 1J1C), Crystal structure of human butyryl cholinesterase (PDB ID: 1P0I), BACE1 inhibitor (PDB ID:4B05), Crystal Structure of Human Acetyl cholinesterase (PDB ID:4PQE), Crystal structure of the E-1 domain of the amyloid precursor protein (4PWQ), Paired helical filament in Alzheimer's disease brain (PDB ID: 503L)  were retrieved from RCSB PDB in. pdb design. They were streamlined by means of arranging hetero atoms and the first conformer of the proteins was considered for docking assessment. Consequently, the conformer was made with explicit number of atoms and residues shifting for each target protein.

 

2.1.2 Preparation of Ligands:

The ligands were chosen dependent on the literature from Pubchem database literature from Pubchem database and the drug likeness property. The focused ligands were then sketched for their 2D structure using Chem Draw 16.0 PerkinElmer software. Each ligand was then optimized using molecular mechanics of Chem3D 16.0 PerkinElmer software for energy minimization followed by geometric conformation. The output structures were then saved in the. pdb format.

 

2.1.3 Molinspiration Cheminformatics:

Molinspiration offers expansive scope of Cheminformatics programming apparatuses supporting standardization of atoms, atom fracture, estimation of different sub-atomic properties required in QSAR and so on. Molinspiration underpins significant sub-atomic properties such as log P, number of hydrogen bond donors and acceptors, polar surface area and many others, just as forecast of bioactivity score for the most significant medication targets (ion channel modulators, GPCR ligands, nuclear receptors, and kinase inhibitors).13 Those compounds which successfully passed the characteristic drug-likeness property with adequate bioactivity scores for targets of AD were subjected to docking studies.14

 

2.1.4 Docking using PyRx:

2.1.4.1 Preparation of ligand:

The structure of the chosen ligands was portrayed in a 2D manner and optimized and stored in the format. pdb. The focused ligands in .pdb format were then converted to. pdbqt format via Open Babel version 2.4.1 software for running Autodock Vina in PyRx tool.

 

2.1.4.2 Preparation of target protein:

The. pdb file format of optimized target proteins (PDB ID: 1IYT, 1J1C, 1P0I, 4B05, 4PQE, 4PWQ, 503L) was also converted into the. pdbqt format using the molecular file format converter Open Babel version 2.4.1 software tool.

 

2.1.4.3 Grid parameters:

The grid box was built for running Autodock vina on optimised target proteins and its parameters including centre (x,y,z) and its dimensions are depicted in the figure. The ligands being optimized were then subjected to docking analysis using Autodock vina wizard using PyRx- Python Prescription 0.8 software against the optimized target proteins.15 After docking, the results of binding affinity were noted.

 

2.1.5 Docking using MVD:

2.1.5.1 Preparation of Ligand:

The ligands that has been optimized and stored in .pdb format are used here for docking analysis.

 

2.1.5.2 Preparation of receptor:

The X-ray beam crystal co-ordinates of different objective proteins (PDB ID: 1IYT, 1J1C, 1P0I, 4B05, 4PQE, 4PWQ, 503L) were recovered from RCSB PDB. Then appropriate bonds, bond requests, hybridization and charges were assigned to it utilizing MVD. The potential binding sites were determined utilizing the built-in cavity detection algorithm executed in MVD. The inquiry space of docking was contemplated as a subset area of 25.0 Angstroms around the dynamic side separated.

 

2.1.5.3 MVDs docking search algorithms:

The scoring limit of Moldock relies upon the Linear Potential- Piecewise, which is a revamped potential whose parameters are fit to protein-ligand structures and a coupling data scoring limit that is also loosened up in GEMDOCK (Generic Evolutionary Method for nuclear DOCK) with another hydrogen holding term and charge plans.16

 

2.1.5.4 Mol Dock score: The H-bonding which involves potential H-donors and acceptors was used to check the hydrogen bond directionality. The coupling site on the protein was characterized as reaching out in X as well as Y and also Z directions around the chose cavity with a span of 25 Angstroms. Ten runs of each docking examination were performed and the Moldock score was resolved.

 

2.1.6 Docking using Hex 8.0:

The docking of the chosen targets with the optimised ligands was performed by utilizing Hex 8.0 programming tool. The receptor and the ligand particle were stacked from open choice then the hydrogen atoms that are polar in nature were inserted into the ligands. The matrix projections were chosen dependent on the dynamic build ups of the targeted protein. The docking was started by choosing docking choice from the control option.17 The Hex message box demonstrated the E-total scores which is the best binding energy or binding affinity of the ligand with that receptor. Subsequently, the E-total score with the interaction of protein with ligands in 2D view was obtained.18

 

2.1.7 Docking using AutoDock4.2:

2.1.7.1 Preparation of Receptors and ligands:

The optimized target proteins (PDB ID: 1IYT, 1J1C, 1P0I, 4B05, 4PQE, 4PWQ, 503L) saved in the .pdb format along with the 2D optimized structure of the focused ligands saved in.pdb format was used for Autodock docking analysis.

 

2.1.7.2 Grid and Docking parameters:

AutoDock 4.0 was propelled in a Cygwin interface in the Windows working system. Docking logs were broke down in the graphical UI of ADT (Auto Dock Tools). Gasteiger charge was appointed to the ligand. Rigid roots were allocated to the ligand and the "active" or rotatable bonds were assigned to be five.19 The altered structures represent the flexibility of bonds and were saved in .pdbqt format. The grid size was set around 60*60*60 revolved around the anticipated cavities with a default grid point spacing of 0.375 Å. They were acquired utilizing Auto Grid with Lamarckian algorithm.20

 

2.1.8 TEST software:

The smiles of the compounds to be evaluated are entered into the TEST software and the rat oral LD50 values are recorded under several advanced QSAR methodologies such as Hierarchical method, Consensus, Group contribution, FDA method, Single model, and nearest neighbour.

 

2.2 IN-Vitro analysis:

The Oleanolic acid (OA), 2, 2_-diphenyl-1-picrylhydrazy, also known as DPPH, Tertiary butyl hydroquinone (TBHQ), bovine serum albumin (BSA) and the vast majority of different chemicals and reagents utilized in this investigation were acquired from Sigma- Aldrich Company Pvt Ltd. All the chemicals utilized were of high purity.

 

2.2.1 Anti-oxidant activity by DPPH assay:

The DPPH compound can produce stable radicals in saturated Methanol solution. If the compound has radical scavenging activity, it will decrease the intensity of absorbance measured.21 The examination was done as follows: 3mL of methanol was added to 150µL solution of 3.3mM DPPH and 100µL of the sample (sample dissolved in DMSO 1mg/ml) at various concentrations. Stir the mixture and incubate for 15mins. After incubation for 1/2, 1 and 2 hrs, measurement of absorbance was done at 517nm against the control. The positive control was TBHQ and the evaluation was done in form of triplicates. The percentage of DPPH radical scavenged can be determined utilizing the following equation:22

 

Percentage Inhibition= [Control Abs - SampleAbs/Control Abs] x 100

 

2.2.2 Anti-oxidant activity by FRAT assay:

The antioxidant activity of OA was measured according to Gülçin et al.23 The reduction taking place from Fe+3 to Fe+2 was assayed by measuring the absorbance at 700nm. 100μL of OA (1mg/ml) was taken and mixed with 1% K3 [Fe (CN) 6] (1ml) and sodium PO4 buffer 1ml (0.2 M at pH 6.6). Incubate for 20 min, and then acidify it by adding 1mL 10% of trichloroacetic acid followed by 250μL of 0.1% of ferric chloride and the absorbance was recorded at a wavelength of 700nm.24

 

Percentage Inhibition= [Control Abs - SampleAbs/Control Abs] x 100

 

2.2.3 Inhibition of Albumin Denaturation:

The inflammation inhibition activity was done using methods from Sakat et al with fewer modifications.25 The sample (varying concentrations) was added to 1% BSA in aqueous form. 1 N of hydrochloric acid was used to adjust the pH to 6.3. At 37°C, incubate it for 15mins followed by heating for 5mins at 70°C. Cool the samples and then measure the absorbance at 660nm and performed in triplicates.

 

The Protein denaturation inhibition percentage was calculated from

 

Percentage Inhibition= [ControlAbs - SampleAbs/Control Abs] x 100

 

2.2.4 Anti-Protease activity:

The Oyedepo et al and Sakat et al method with less modification was used here.26 0.06mg trypsin (2ml), Tris HCl buffer 20mM (1ml at pH 7.4), sample (1ml of different concentrations) was incubated for 5 min at 37oC . 0.8% (w/v) casein (1ml) was added and incubated for 20mins. 70% per chloric acid (2ml) was added and then the suspension was centrifuged. The supernatant was measured for absorbance at 210nm and was done in triplicate. The proteinase inhibitory activity percentage was calculated:

 

Percentage Inhibition= [ControlAbs - SampleAbs/Control Abs] x 100

The Data is expressed here in the form of mean ±standard deviation (SD). All tests were done utilizing Graph Pad Prism and the variation between experimental groups was compared by ANOVA.

 

3.0 RESULTS AND DISCUSSION:

Acknowledgment of the capacity of commonly available natural items having a good impact on wellbeing is now developed enthusiasm for determining benefits of utilizing natural product that promises in health-promoting properties. Hence, this results in new drug development for its medicinal purposes. For instance, the advantages of naturally available items have now been effectively illustrated in AD.27 Inspite of knowing that its etiology stays obscure, the Neuro-pathological profile of AD is related with memory loss and plaques formation. This causes outburst of free radicals and inflammation resulting in degeneration in the forebrain of basal region.28 This study aims to identify phytoconstituents that has the ability to elicit a multi-target action over AD targets. Besides, at the sub-atomic level, patients influenced by AD shows storage of Amyloid beta, spiral filaments in neurons along with enhanced oxidative stress and inflammation.29 In addition, Ach, glutamate, and serotonin like other neurotransmitters are also affected in the delayed phase of AD. Henceforth, the treatment methodologies available are essentially symptomatic.30 A few of the cholinesterase inhibitors are presently being used such as donepezil, tacrine31, rivastigmine, and galantamine, which has many Side effects. Therefore, there is a developing logical intrigue in recognizing natural sources for the treatment of AD.32 Computational studies enroutes us to find compounds and analyse their binding affinty to focused protein.33 The present study deals with the investigation of the phytoconstituents from the plant Sygyzium aromaticum for a MTA of Alzheimer’s disease.

 

3.1 Drug likeness Property analysis:

From the Table 1, it is evident that only few phytoconstituents had the drug likeness property as their scores were found to be in range (milogP(<=5); TPSA(<=140 Å2); MW(<=500 Daltons); nON(<=10); nOHNH(<=5); nrotb(<=10)). As the ligands are directed towards multi-target action, the selection of constituents was also based on their bioactivity scores as shown in Table 2, primarily based on Enzyme inhibition, Protease inhibition and kinase inhibition. Hence, the bioactivity scores of the eight phytoconstituents (Biflorin (1), Campesterol (5), Kaempferol (6), Rhamnocitrin (7), Rhamnetin (8), Isoengeletin (9), Oleanolic acid (10), Isobiflorin (12)) were found to be significantly producing inhibition. Hence, these eight ligands were considered for docking analysis.


 

Table 1. Drug likeness property of phytoconstituents

S. No

Ligand Name

Mi logp

TPSA

natoms

MW

noH

noHNH

nvoi

nrot

Voume

1

Biflorin

-0.7

160.8

25

354.3

9

6

1

2

292.34

2

Casuarictin

2.1

444.1

67

936.6

26

15

3

3

707.18

3

Eugeniin

2.43

444.1

67

938

26

15

3

9

718

4

Tellimagrandin I

1.2

385.2

56

786.5

22

13

3

9

606.3

5

Campesterol

8.3

20.23

29

400.6

1

1

1

5

439.7

6

Kaempferol

2.17

111.1

21

286.2

6

4

0

1

232.07

7

Rhamnocitrin

2.71

100.1

22

300.2

6

3

0

2

249.59

8

Rhamnetin

2.22

120.3

23

316.2

7

4

0

2

257.61

9

Isoengeletin

0.5

166.1

31

434.4

10

6

1

3

362.17

10

Oleanolic acid

6.72

57.5

33

456.7

3

2

1

1

471.14

11

Stigmasterol-3-O-beta-D-glucopyranoside

6.16

99.38

41

574.8

6

4

2

8

582.45

12

Isobiflorin

0.70

160.8

25

354.3

9

6

1

2

292.34

13

Strictinin

0.31

310.6

45

634.4

18

11

3

3

487.20

TPSA- Total Polar Surface Area; MW- Molecular Weight; nvoi- Number of Violations

 

Table 2. Bioactivity score of the phytoconstituents

S. No

Ligand Name

GPCR ligand

Ion ligand

Kinase inhibitor

Nuclease ligand

Protease inhibitor

Enzyme inhibitor

1

Biflorin

-0.09

-0.14

-0.20

0.01

-0.08

0.4

2

Casuarictin

-3.4

-3.6

-3.6

-3.6

-3.1

-3.5

3

Eugeniin

-3.4

-3.6

-3.6

-3.6

-3.1

-3.5

4

Tellimagrandin I

-1.5

-2.7

-2.2

-2.3

-1.5

-1.8

5

Campesterol

0.11

0.01

-0.48

0.71

0.01

0.50

6

Kaempferol

-0.1

-0.2

0.21

0.32

-0.27

0.26

7

Rhamnocitrin

-0.12

-0.28

0.19

0.30

-0.28

0.20

8

Rhamnetin

-0.11

-0.27

0.21

0.27

-0.27

0.20

9

Isoengeletin

0.10

0.05

0.03

0.11

0.17

0.34

10

Oleanolic acid

0.28

-0.06

-0.40

0.77

0.15

0.65

11

Stigmasterol-3-O beta-D-glucopyranoside

0.14

-0.30

-0.45

0.34

0.04

0.42

12

Isobiflorin

-0.08

-0.33

-0.16

0.01

-0.09

0.39

13

Strictinin

-0.11

-0.71

-0.45

-0.44

-0.03

-0.15

 


3.2 Docking analysis:

Docking analysis is done in order to elucidate the relationship between the ligands and the targets of AD. In this present study, various tools involved are Hex 8.0, PyRx, MVD and at last AutoDock 4.2 software. The efficient compounds were noted by docking results.34

 

The results from MVD as shown in the Table 3, indicated that the phytoconstituents Campesterol (5), Kaempferol (6), and Oleanolic acid (10) has higher Moldock score in comparison to other phytoconstituents for a MTA against AD. Moldock scores were owing to total impacts of strong Hydrogen-bonds, cationic-p,p-p bond associations and hydrophobic interactions. The results from Hex 8.0 is presented in the table 4, the results were expressed in terms of E-values indicating the energy required for docking. Hence, the top three compounds with highest E- value were found to be Oleanolic acid (10) with -1949.2, Isoengeletin (9) with -1936.92 and Campesterol (5) with -1929.4.

 

The chosen phytoconstituents were exposed to PyRx virtual docking tool through Autodock vina programming are in Table 5. The docked complexes generated were inspected dependent on binding energy values (units: kcal/mol) and bonding interaction patterns (hydrogen, hydrophobic, and electrostatic). The AutoDock vina outcomes stated that Oleanolic acid has -57.5 energy value followed by Isoengeletin with -53 value and Campesterol with -52.9. The ligand Oleanolic acid expressed strong hydrogen bonding interactions with certain residues of amino acids such as GLU-318, ASP-530, and LYS-616 with distances of 1.62 Å, 2.41 Å and 2.55 Å, respectively, which were located on active-sites of 1J1C. The results using AutoDock 4.2 tool were depicted as follows in Table 6. The ligand Oleanolic acid (10) had the highest docking of -54.62 when compared with other phytoconstituents and standard drugs. The interaction of the compound with various targets was as follows. In case of 1IYT, the interaction of amino acids LYS-16, PHE-20, ASP-23, UNK-1 at active binding sites of targets was at certain distances respectively. Similarly, in case of 1POI, interactions of amino acids PRO-230, ALA-229, ASN-228, VAL-233, ASP-304 was found with carbon atoms at various positions of target at a distance of range 1.5-2.9 Å. In case of 4B05, the residues LEU-234, LEU- 236, PHE-241, VAL-240, PHE-322 interacted with the binding sites of hydrophobic target in a distance of 1.7 Å, 2.1 Å, 2.3 Å, 2.8 Å. At last, in case of 4PQE, interactions involve hydrophobic residues such as ARG-18, ASP-61, VAL-60, ALA-62 at a specific distance with the active sites of target receptor. The interaction between ligand and target protein (1IYT, 1P0I, 4B05 and 4PQE) is shown in the figures 1-4. As Oleanolic acid produced significant results in above mentioned tools, it was taken for further evaluation.


 

Table 3. MVD (Molecular Virtual Docking) Results

Receptor

Scores

1

5

6

7

8

9

10

12

1iyt

MD

-40.6

-51.6

-61.1

-63.9

-61.3

-52.1

-49.4

-44.64

RE

-45.6

-32.5

-53.9

-54.5

-53.0

-29.0

-36.3

-28.64

HB

-6.44

0

-0.90

-2.5

-0.6

0

-5.45

-4.52

1jlc

MD

-55.8

-81.7

-60.9

-71.3

-61.5

-77.2

-63.6

-68.36

RE

-62.6

-60.4

-54.6

-63.7

-50.1

-59.5

-52.7

-61.12

HB

-12.5

-9.86

-8.32

-10.6

-7.4

-7.5

-10.6

-20.49

1poi

MD

-89.6

-97.5

-95.1

-98.2

-100

-111

-118

-102.3

RE

-89.0

-88.1

-88.8

-40.9

-87.9

-37.7

-109

-91.77

HB

-9.31

-56.7

-4.90

-7.17

-4.97

-2.5

-15.6

-11.34

4bo5

MD

-71.7

-100

-91.5

-62.9

-70.1

-84.4

-72.6

-67.83

RE

-68.5

-82.6

-70.3

-56.0

-64.6

-82.8

-71.7

-62.71

HB

-8.59

0

-1.34

-9.37

-8.53

-3.1

-12.3

-10.68

4pqe

MD

-101

-127

-117

-125

-125

-45.1

-132.

-128.8

RE

-58.5

52.7

-100

-105

-104

-35.9

-108

-113

HB

-14.2

-5.72

-6.85

-6.81

-3.51

-7.08

-11.6

-19.21

4pwr

MD

-88.8

-97.0

-83.0

-85.8

-93.1

-78.3

-104

-85.61

RE

-85.2

-76.8

-74.2

-76.0

-72.1

-7.33

-82.4

-73.42

HB

-12.5

-2.5

-5.33

-5.48

-10.2

-5

-23.0

-8.42

503l

MD

-17.7

-55.6

-47.7

-46.5

-46.3

-45.0

-51.8

-52.09

RE

-23.5

-29.1

-41.5

-40.8

-40.6

-32.7

-47.6

-43.48

HB

-2.68

0

-3.84

-0.14

-0.14

-2.5

-9.30

-6.52

Total Binding Socre

Moldock Score

-465.9

-611.7

-557.7

-553.4

-557.4

-416.2

-592.1

-462.88

MD-MolDock score; RE- Re rank score; HB- Hydrogen bonding

 

Table 4. HEX 8.0 Docking Results (E-values)

Ligand

1IYT

1J1C

1P0I

4B05

4PQE

4PWQ

503L

Total Binding Energy

1

-219.48

-268.68

-291.65

-244.96

-276.32

-240.94

-213.44

-1755.47

5

-237.19

-311.99

-327.43

-295.21

-256.84

-256.84

-243.86

-1929.4

6

-239.46

-233.68

-257.59

-299.34

-248.47

-239.36

-23.46

-1757.36

7

-245.5

-259.07

-265.85

-228.18

-275.44

-259.86

-238.51

-1772.11

8

-255.16

-252.64

-252.64

-227.94

-298.9

-260.39

-257.50

-1805.17

9

-229.82

-289.94

-321.75

-287.57

-308.9

-274.04

-232.90

-1936.92

10

-216.10

-301.88

-341.59

-320.89

-275.72

-263.93

-230.11

-1949.21

12

-207.19

-264.06

-281.01

-244.20

-274.30

-241.99

-231.50

-1744.25

 

Table 5. PyRx Docking Results (Kcal/mol)

LIGAND

1IYT

1J1C

1P0I

4B05

4PQE

4PWQ

503L

Total Binding Energy

1

-7.3

-6.9

-10.4

-7.8

-7.8

-6.4

-4.9

-51.5

5

-7.3

-8.6

-6.3

-9.3

-8.3

-6.8

-6.3

-52.9

6

-6.1

-8.8

-7.8

-8.2

-8.7

-7.5

-5.7

-52.8

7

-7.5

-8.4

-10.9

-8.0

-9.1

-7.6

-5.5

-57

8

-6.8

-8.1

-7.5

-8.4

-8.7

-6.9

-5.5

-51.9

9

-7.1

-8.6

-7.4

-9.1

-7.9

-7.2

-5.7

-53

10

-6.7

-8.0

-11.1

-9.5

-8.3

-7.6

-6.3

-57.5

12

-7.2

-7.2

-5.9

-8.2

-9.4

-6.8

-5.2

-49.9

 

Table 6. AutoDock4.0 Docking Results

Ligand

1IYT

1J1C

1P0I

4B05

4PQE

4PWQ

503L

Total Binding Energy

1

-1.56

-7.5

-6.8

-4.47

-5.52

-5.3

-2.28

-32.83

5

-6.81

-1.89

-1.86

-6.07

-12.8

-3.96

-6.24

-39.63

6

-6.37

-5.82

-3.62

-7.13

-9.9

-5.63

-4.85

-43.32

7

-7.07

-1.43

-6.51

-7.69

-7.42

-5.06

-4.01

-39.19

8

-2.74

-6.5

-3.56

-6.14

-9.98

-3.39

-6.11

-38.42

9

-58

-1.11

-3.66

-8.03

-12.26

-4.63

-4.85

-40.34

10

-8.58

-2.38

-8.02

-9.34

-12.96

-8.73

-4.61

-54.62

12

-5.96

-1.35

-2.42

-6.23

-10.1

-3.81

-5.01

-34.89

 


3.3 Toxicity Estimation Software Tool:

The TEST Tool was created to estimate easily the toxicity of synthetic compounds utilizing Quantitative Structure Activity Relationships (QSARs). On evaluating the eight phytoconstituents, the Oral Rat LD50 value was determined to be significant for Oleanolic acid as expressed in the Table 7.

 


Table 7. Toxicity Estimation Results of Oleanolic acid

Sl. No

Methods

Oral rat LD50 Predicted Values (-Log 10/ Mol)

1

5

6

7

8

9

10

12

1

Consensus

2.25

2.18

2.07

3.63

3.01

2.19

1.98

2.11

2

Hierarchical clustering

N/A

2.11

2.24

3.35

3.18

2.29

2.09

N/A

3

Single model

-

-

-

-

-

-

-

-

4

Group contribution

-

-

-

-

-

-

-

-

5

FDA

2.65

2.45

1.90

3.64

3.39

1.76

2.00

2.37

6

Nearest neighbour

1.84

1.89

2.07

3.89

2.47

2.52

1.87

1.84

 


3.4 In-Vitro anti-oxidant assay:

DPPH is a free radical in stable form which is utilized for evaluating various naturally available compounds for their anti-oxidant property. The results of our DPPH scavenging activity indicates that Oleanolic acid has potential anti-oxidant activity better than that of the positive control used (Figure 5). The antioxidant property of OA is dependent on dose (increase in dose increases activity). Similarly, the electron-donating potential can be found by Fe+3 reductions which act as the important mechanism of anti-oxidant activity.35 The FRAP results showed that Oleanolic acid has higher ferric reducing power ranging from 1.153 to 1.632 when compared with control (Figure 6).

 

Figure 5. DPPH anti-oxidant activity results

 

Figure 6. FRAP anti-oxidant activity results

 

3. 5 In-Vitro anti-inflammatory assay:

Inflammation is the response of the immunological defence system of body against various pathogenesis including neurodegenerative diseases. Inflammation is a series of cascade reactions that is complex which results in tissue repair and damage.36 Protein will lose their biological function when denatured. It is a main cause of inflammation. Compounds that inhibit protein denaturation would be considered as anti-inflammatory drug. In this investigation of Oleanolic acid, Table 8 shows that it has anti-inflammatory property by inhibiting albumin denaturation. The leukocytes proteinase has been previously reported to play a major role in the developing tissue damage.  Protection from inflammation can be produced by proteinase inhibitors. Significant anti proteinase activity of OA at different concentrations is represented in Table 9. It shows significant results compared with control indicating its inflammatory inhibitory action.

 

Table 8. Effect of Oleanolic acid on Heat induced protein denaturation

Treatment

 

Concentration

(µg/ml)

Absorbance at 660nm

% Inhibition of Protein denaturation

Oleanolic acid

50

0.13±0.01

65

100

0.11±0.03

71

200

0.10±0.03

73

Aspirin

100

0.12±0.01

68

 

Table 9. Effect of Oleanolic acid on protease inhibition

Treatment

 

Concentration

(µg/ml)

Absorbance at 660nm

% Inhibition of protease action

Oleanolic acid

50

0.18±0.09

53

100

0.15±0.04

59

200

0.14±0.05

61

Aspirin

100

0.17±0.01

55

 

4.0 CONCLUSION:

To summarize the study, an attempt was initiated to identify a novel candidate from the natural resources that would elicit MTA against AD. Since AD involves various targets and till date there is no cure for it. Researchers focus mainly towards AchE and BchE considering them as novel targets despite knowing the fact that there are many more targets of AD majorly free radical outburst and inflammation. Hence, this study involves screening for MTA using Syzygium aromaticum's phytoconstituents. After performing various virtual analyses and considering the outcome from every tool utilized in this study, the phytoconstituent Oleanolic acid might be considered the potential candidate for eliciting multiple drug action against various targets of AD. The outcome of assays produced evidence that Oleanolic acid has significant anti-oxidant and inflammation inhibitory property. Furthermore, in-vivo and cell line studies can be performed for better understanding the mechanism involved by the compound in the treatment through various targets and how it affects various organs in the body.

 

 

5.0 ACKNOWLEDGEMENT:

The authors would like to acknowledge the management of Faculty of pharmacy, Sri Ramachandra Institute of Higher Education and Research for their valuable support.

 

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Received on 27.05.2020           Modified on 29.07.2020

Accepted on 10.09.2020         © RJPT All right reserved

Research J. Pharm. and Tech. 2021; 14(7):3515-3522.

DOI: 10.52711/0974-360X.2021.00609